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Millipore Technical Library - Frequently Asked Questions

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I have been using Nitrocellulose for my Western Blots but am thinking of converting over to Immobilon-P PVDF membrane. Are there any differences in the protocol that I should know about?

Protocols for Western Blotting with PVDF and Nitrocellulose are the same with a few exceptions. PVDF is hydrophobic and therefore should be prewet in methanol before it is used. Wet the membrane in methanol for 15 seconds. Membrane should uniformly change from opaque to semi-transparent. Carefully place the membrane in ultrapure water and soak for 2 minutes. Then carefully place the membrane in transfer buffer and let equilibrate for at least 5 minutes.

Another change to note is that the SDS tolerances are not equivalent for the two membranes. The binding of protein to Immobilon P is much more sensitive to SDS levels. Too much SDS can inhibit the protein's ability to bind to the PVDF and can, in fact, help proteins already bound to the membrane to slip off. SDS levels should never exceed 0.05%.